Publications of Zaikin Lab
(Short guide to my papers | pdf list is here | presentations list is here)
Google (05.03.2026): h-index 42, citations 6054.
Web of Science: K-6581-2017
ORCID: 0000-0001-7540-1130
Scopus AuthorID: 7103103296
| 2026 | |
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206. R MacSwan, Z Li, PP Athauda, E Demirsoy, V Le Thanh, R George-Carey, E Cornish, J Ziesmann, A Sammut, G Attilakos, A Zaikin, R Napolitano, "EP07.11 Optimal timing of delivery in suspected late growth restricted fetuses at term: are 37 and 39 weeks valid cut-offs?", Ultrasound in Obstetrics & Gynecology 68, 201-201 (2026). |
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205. A. Zaikin, D. Vlasenko, D. Zakharov, J.G. Oganezova, M.I. Krivonosov, M. Ivanchenko, O. Blyuss, "Benchmarking Synolitic Graphs for Autism Classification from Multisite Resting-State fMRI", Diagnostics 16, 2746 (2026). https://doi.org/10.3390/diagnostics16172746 |
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204. O. Semyachkina-Glushkovskaya, A. Kumar, A. Zaikin, "Advanced technologies and innovative strategies for neurotheranostics", Eur. Phys. J. Spec. Top. (2026). https://doi.org/10.1140/epjs/s11734-026-02580-9 |
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203. M.I. Krivonosov, A. Trukhanov, N. Sushentsev, T. Barrett, A. Zaikin, "Synolitic Graph Neural Networks for MRI-Derived Radiomic-Based Prediction of Prostate Cancer Progression on Active Surveillance", Cancers 18, 1389 (2026). https://doi.org/10.3390/cancers18091389 |
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202. Lyndsay Creswell, Martha Christodoulou, Karen Chang, Laura Pentecost, Boren Sun, Alexey Zaikin, Raffaele Napolitano, Sara L Hillman, Daniel Stott, Diane Nzelu, "Pregnancy and perinatal outcomes stratified by soluble fms-like tyrosine kinase-1 and placental growth factor gestation-specific thresholds in women with suspected preeclampsia", American Journal of Obstetrics & Gynecology, (2026). |
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201. Mikhail I Krivonosov, Ekaterina Pazukhina, Mikhail Rumyantsev, Elina Abdeeva, Dina Baimukhambetova, Polina Bobkova, Yasmin El-Taravi, Maria Pikuza, Anastasia Trefilova, Aleksandr Zolotarev, Margarita Andreeva, Ekaterina Iakovleva, Nikolay Bulanov, Sergey Avdeev, Alexey Zaikin, Valentina Kapustina, Victor Fomin, Andrey A Svistunov, Peter Timashev, Janna G Oganezova, Nina Avdeenko, Yulia Ivanova, Lyudmila Fedorova, Elena Kondrikova, Irina Turina, Petr Glybochko, Denis Butnaru, Oleg Blyuss, Daniel Munblit, Sechenov StopCOVID Research Team, "Sex-Stratified Machine Learning for the Prediction of Post-COVID Condition: A Longitudinal Cohort Study", Journal of Clinical Medicine 15, 3367 (2026). |
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200. T. Pandya, ...., A..Zaikin, ... C. Swanton, "Plasma signals of lung tumor promotion for molecular cancer prevention", Cell 189, 1-19 (2026). 10.1016/j.cell.2026.05.005 |
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199. N Sushentsev, AY Warren, R Colling, C Verrill, E Pazukhina, O Blyuss, A Zaikin, TM Seibert, T Barrett, J Oxley, IG Mills, RJ Bryant, JA Lane, JL Donovan, DE Neal, FC Hamdy, "Long‐term outcomes of cribriform‐positive and cribriform‐negative prostate cancer treated with radical prostatectomy in the ProtecT trial", BJU International, https://doi.org/10.1111/bju.70261 |
| 198. Zhongwen Bi, Qi Liu, Dan Zhao, Alexey Zaikin, Yong Xu, "Sparsity-induced resonance in complex networks", Physical Review E 113, L032302 (2026). DOI: https://doi.org/10.1103/f14l-5ls7 | |
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197. M. Ivan, A. Banerjee, E. Pazukhina, UCLH Preterm Birth Clinic Research Group, O. Blyuss, A. Zaikin, D. Jurkovic, A. David, R. Napolitano, A. Tetteh, N. Greenwold, K. Maksym, D. Casagrandi, "Prediction of preterm birth using 3D volume cesarean scar morphology in pregnant women with previous advanced labor cesarean delivery", Acta Obstetricia et Gynecologica Scandinavica (2006, in press) |
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196. L. Creswell, M. Christodoulou, K. Chang, L. Pentecost, B. Sun, A. Zaikin, R. Napolitano, S.L. Hillman, D. Stott, D. Nzelu, " Pregnancy and perinatal outcomes stratified by sFlt-1 and PlGF gestation-specific thresholds in women with suspected preeclampsia", American Journal of Obstetrics and Gynecology, in press (2026). https://doi.org/10.1016/j.ajog.2026.02.030 |
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195. Zaikin, A., Sviridov, I., Sosedka, A., Linich, A., Nasyrov, R., Mirkes, E.M., Tyukina, T. Overcoming the Curse of Dimensionality with Synolitic AI. Technologies, 14, 84 (2026). https://doi.org/10.3390/technologies14020084 |
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194. Li, Zonglun; Zaikin, Alexey; "Noise-induced maximization of integrated information in FitzHugh-Nagumo networks" Physical Review Research 8, 1, L012020, (2026). https://doi.org/10.1103/dftc-vzvv |
| 2025 | |
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193. Alexey Zaikin, Ivan Sviridov, Janna G. Oganezova, Usha Menon, Aleksandra Gentry-Maharaj, John F. Timms, Oleg Blyuss, "Synolitic Graph Neural Networks of High-Dimensional Proteomic Data Enhance Early Detection of Ovarian Cancer", Cancers 17, 3972 (2025). https://doi.org/10.3390/cancers17243972 |
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192. Vershinina, O.; Sushentsev, N.; Zaikin, A.; Blyuss, O.; Barrett, T.; Ivanchenko, M. Improving the Potential for Predicting Prostate Cancer Progression in Patients on Active Surveillance Using Explainable Artificial Intelligence. Cancers 2025, 17, 3598. https://doi.org/10.3390/cancers17223598 |
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191. Hramov, A.E., Ghosh, D., Pisarchik, A.N., Pavlov, A., Stoyanov D., Zaikin A., Kurkin S., and Sanjuan M., "Artificial intelligence and complex networks meet natural sciences". Eur. Phys. J. Spec. Top. (2025). https://doi.org/10.1140/epjs/s11734-025-01844-0 |
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190. J. Li, J.K. Liu, A. Zaikin, M. Wang, S. Chen, "Modulating the excitation/inhibition balance by astrocytes with a tripartite synapse model of Alzheimer's disease", Neural Regeneration Research, accepted (2025). |
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189. Z. Wang, Y. Gao, A. Zaikin, H. Li, Y. Xu, "System-size coherence resonance in coupled FHN neurons with 𝛼-stable Lévy noise", Chaos, Solitons, and Fractals 200, 116985 (2025) https://doi.org/10.1016/j.chaos.2025.116985 |
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188. Nikita Sushentsev, Irene G. Li, George Xu, Anne Y. Warren, Celeste Y. Hsu, Madison Baxter, Dev Panchal, Christof Kastner, Sean Fernando, Ekaterina Pazukhina, Oleg Blyuss, Alexey Zaikin, Ahmed Shabaik, Anders M. Dale, Michael Liss, Tristan Barrett, Tyler M. Seibert, "Predicting Active Surveillance Failure for Patients with Prostate Cancer in the Magnetic Resonance Imaging Era: A Multicentre Transatlantic Cohort Study", European Urology Oncology, 2025, https://doi.org/10.1016/j.euo.2025.06.012 |
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187. Athauda, Piyanga, Zonglun Li, Ruth MacSwan, Roise Dudley, Jenny Stokes, Christina Ammari, Davide Casagrandi, Alexy Zaikin, and Raffaele Napolitano. "Monitoring and timing of delivery in suspected late fetal growth restriction at term." American Journal of Obstetrics and Gynecology (2025). https://doi.org/10.1016/j.ajog.2025.04.051 |
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186. Mahvash Mohammadi, S.; Rumyantsev, M.; Abdeeva, E.; Baimukhambetova, D.; Bobkova, P.; El-Taravi, Y.; Pikuza, M.; Trefilova, A.; Zolotarev, A.; Andreeva, M.; et al. Post-COVID-19 Condition Prediction in Hospitalised Cancer Patients: A Machine Learning-Based Approach. Cancers 2025, 17, 687. https://doi.org/10.3390/cancers17040687 |
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185. Krivonosov, M.I.; Pazukhina, E.; Zaikin, A.; Viozzi, F.; Lazzareschi, I.; Manca, L.; Caci, A.; Santangelo, R.; Sanguinetti, M.; Raffaelli, F.; et al. Evaluating the Effect of Climate on Viral Respiratory Diseases Among Children Using AI. J. Clin. Med. 2024, 13, 7474. https://doi.org/10.3390/jcm13237474 |
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184. Krivonosov, M.; Nazarenko, T.; Ushakov, V.; Vlasenko, D.; Zakharov, D.; Chen, S.; Blyuss, O.; Zaikin, A. Analysis of Multidimensional Clinical and Physiological Data with Synolitical Graph Neural Networks. Technologies 2025, 13, 13. https://doi.org/10.3390/technologies13010013 |
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181. H. Sun, Y. Ishbulatov, A. Karavaev, D. Zakharov, and A. Zaikin, "A thermodynamic model of the REM-NREM sleep cycle", Chaos, Solitons & Fractals 190, 115732 (2025). https://doi.org/10.1016/j.chaos.2024.115732 |
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178. Zonglun Li, Andrey Andreev, Alexander Hramov, Oleg Blyuss, Alexey Zaikin, "Novel efficient reservoir computing methodologies for regular and irregular time series classification", Nonlinear Dynamics 4045–4062 (2025). https://doi.org/10.1007/s11071-024-10244-3 |
| 2024 | |
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183. Ivan, M., Banerjee, A., Pazukhina, E., Mahdy, H., Casagrandi, D., Tetteh, A., Greenwold, N., Blyuss, O., Zaikin, A., Jurkovic, D., David, A.L. and Napolitano, R. (2024), EP17.26: Spontaneous preterm birth prediction using 3D ultrasound assessment of previous advanced labour Caesarean scar. Ultrasound Obstet Gynecol, 64: 269-269. https://doi.org/10.1002/uog.28683 |
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182. Athauda, P.P., MacSwan, R., Stokes, J., Ammari, C., Dudley, R., Casagrandi, D., Li, Z., Zaikin, A. and Napolitano, R. (2024), OC14.06: Optimal management and timing of delivery in late fetal growth restriction at term using a risk stratification protocol. Ultrasound Obstet Gynecol, 64: 37-38. https://doi.org/10.1002/uog.27819 |
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180. D. Vlasenko, A. Zaikin and D. Zakharov, "Ensemble methods for representation of fMRI, EEG/MEG data in graph form for classification of brain states," 2024 8th Scientific School Dynamics of Complex Networks and their Applications (DCNA), Kaliningrad, Russian Federation, IEEE 2024, pp. 258-261, https://doi.org/10.1109/DCNA63495.2024.10718443. |
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179. T. Nazarenko, A.Zaikin, M. Widschwendter, "Technical and biological sources of unreliability of Infinium probes on Illumina Methylation microarrays", Clinical Epigenetics 16, 131 (2024). https://doi.org/10.1186/s13148-024-01739-2 |
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177. N. Nene, A. Ney, E. Sedlak, P. Acedo, O. Blyuss, H. Whitwell, E. Costello, A. Gentry-Maharaj, N. Williams, U. Menon, G. Fusai, A. Zaikin, S. Pereira, " Identification of a serum proteomic biomarker panel using diagnosis specific ensemble learning and symptoms for early pancreatic cancer detection", PLOS Computational Biology, 20 (8), e1012408 (2024). https://doi.org/10.1371/journal.pcbi.1012408 |
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176. A.J.H. Fedorec, N.J. Treloar, ...,A.Zaikin, C.P. Barnes, "Emergent digital bio-computation through spatial diffusion and engineered bacteria", Nature Communications 15 (1), 4896 (2024). https://doi.org/10.1038/s41467-024-49264-3 |
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175. Abrego L, Zaikin A, Marino IP, et al. Bayesian and deep-learning models applied to the early detection of ovarian cancer using multiple longitudinal biomarkers. Cancer Medicine 2024; 13:e7163 |
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174. Amrita Banerjee, IVAN Maria, Tatiana Nazarenko, Roberta Solda, Emmanouella F Bredaki, Davide Casagrandi, Amos Tetteh, Natalie Greenwold, Alexey Zaikin, Davor Jurkovic, Raffaele Napolitano, Anna L David, "Prediction of spontaneous preterm birth in women with previous full dilatation cesarean delivery", American Journal of Obstetrics & Gynecology MFM, 2024. |
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173. Kanakov, O., Chen, S., & Zaikin, A., "Learning by selective plasmid loss for intracellular synthetic classifiers", Chaos, Solitons & Fractals, 179, 114408 (2024). https://doi.org/10.1016/j.chaos.2023.114408 |
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172. Oxana Semyachkina-Glushkovskaya, Ivan Fedosov, Alexey Zaikin, Vasily Ageev, Egor Ilyukov, Dmitry Myagkov, Dmitry Tuktarov, Inna Blokhina, Alexander Shirokov, Andrey Terskov, Daria Zlatogorskaya, Viktoria Adushkina, Arina Evsukova, Alexander Dubrovsky, Maria Tsoy, Valeria Telnova, Maria Manzhaeva, Alexander Dmitrenko, Valeria Krupnova, and Jürgen Kurths, "Technology of the photobiostimulation of the brain’s drainage system during sleep for improvement of learning and memory in male mice", Biomed. Opt. Express 15(1), 44-58 (2024) |
| 2023 | |
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171. S. Gordleeva, Y. A. Tsybina, M. I. Krivonosov, I. Y. Tyukin, V. B. Kazantsev, A. A. Zaikin, A. N. Gorban, "Situation-based neuromorphic memory in spiking neuron-astrocyte network", IEEE Transactions on Neural Networks and Learning Systems, (2023). doi.org/10.1109/TNNLS.2023.3335450 |
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170. A. Suvorov, I Latushkina, K. Gulyaeva, N. Bulanov, M. Nadinskaya, A. Zaikin, "Basic aspects of meta-analysis. Part 1", Sechenov Medical Journal 14, 4-14 (2023). |
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169. H. Gao, L. Liu, A. Zaikin, S. Chen, "An efficient reduced-lattice model of IP3R for probing Ca2+ dynamics", BBA-Biomembranes 1865, 184195 (2023). |
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168. Vlasenko, D., Zaikin, A., & Zakharov, D. (2023). Classification of brain activity using Synolitic networks. In Proceedings of the 2023 7th Scientific School Dynamics of Complex Networks and Their Applications (DCNA) (pp. 291–294). Kaliningrad, Russian Federation. https://doi.org/10.1109/DCNA59899.2023.10290661 |
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167. D. Vlasenko, A.Zaikin, D. Zakharov, "Classification of brain activity using Synolitic networks", Izvestiya VUZ, Applied Nonlinear Dynamics 31, 661-669 (2023). |
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166. N. Sushentsev, L. Abrego, A. Colarieti, N. Sanmugalingam, A. Stanzione, J. P. Zawaideh, I. Caglic, A. Zaikin, O. Blyuss, T. Barrett, "Using a Recurrent Neural Network To Inform the Use of Prostate- specific Antigen (PSA) and PSA Density for Dynamic Monitoring of the Risk of Prostate Cancer Progression on Active Surveillance", European Urology Open Science 52, 36-39 (2023). |
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165. Hannah Ee Juen Yong, Katarzyna Maksym, Muhammad Ashraf Bin Yusoff, Esteban Salazar-Petres, Tatiana Nazarenko, Alexey Zaikin, Anna L David, Sara L Hillman, Amanda N Sferruzzi-Perri, "Integrated placental modelling of histology with gene expression to identify functional impact on fetal growth", Cells 12, 7 1093 (2023). |
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164. R. Pesaley, L.A. Abrego Rangel, D. Casagrandi, V. Donadono, M Willinger, G. Conti, Y. Seminara, N. Marlow, A.L. David, G. Attilakos, P. Pandya, A. Zaikin, D. Peebles, R. Napolitano, "Management of late-onset fetal growth restriction: a pragmatic based approach", Ultrasound in Obstetrics & Gynecology 62, 106-114 (2023). |
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163. N.R. Nené, A. Ney, T. Nazarenko, O. Blyuss, H.E. Johnston, H.J. Whitwell, E. Sedlak, A. Gentry-Maharaj, S. Apostolidou, E. Costello, W. Greenhalf, I. Jacobs, U. Menon, J. Hsuan, S. P. Pereira, A. Zaikin & J. F. Timms, "Serum biomarker-based early detection of pancreatic ductal adenocarcinomas with ensemble learning", Communications Medicine 3, 10 (2023). |
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162. N. Sushentsev, L. Rundo, L. Abrego, Z. Li,, T. Nazarenko, A.Y. Warren, V.J. Gnanapragasam, E. Sala, A. Zaikin, T. Barrett, O. Blyuss, "Time series radiomics for the prediction of prostate cancer progression in patients on active surveillance", European Radiology (2023). |
| 2022 | |
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161. J. Li, A. Zaikin, X. Zhang, and S. Chen, Editorial: "Closed-loop iterations between neuroscience and artificial intelligence", Frontiers in Systems Neuroscience 16, 1002095 (2022). |
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160. M. Krivonosov, T. Nazarenko, M.G. Bacalini, M.V. Vedunova, C. Franceschi, A. Zaikin, and M. Ivanchenko, "Age-related trajectories of DNA methylation network markers: a parenclitic network approach to a family-based cohort of patients with Down Syndrome", Chaos, Solitons, and Fractals 165, 112863 (2022). doi.org/10.1016/j.chaos.2022.112863 |
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159. A. Zhao, A. Ermolaeva, E. Ullner, J. Kurths, S. Gordleeva, A. Zaikin, "Noise-induced artificial intelligence", Physical Review Research 4, 043069(2022). 10.1103/PhysRevResearch.4.043069 |
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158. Zonglun Li, Yuliya Tsybina, Susanna Gordleeva, Alexey Zaikin, "Impact of astrocytic coverage of synapses on the short-term memory of a computational neuron-astrocyte network", Mathematics 10, 3275 (2022). |
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157. *AY Suvorov, NM Bulanov, AN Shvedova, EA Tao, DV Butnaru, MY Nadinskaya, A Zaikin, "Statistical Hypothesis Testing: general approach in medical research", Sechenov Medical Journal 13(1), 4-13 (2022). |
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156. Zonglun Li, Alya Fattah, Peter Timashev, and Alexey Zaikin, "An Account of Models of Molecular Circuits for Associative Learning with Reinforcement Effect and Forced Dissociation", Sensors 22, 5907 (2022). https://doi.org/10.3390/s22155907 |
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155. Y. Efremov, A. Ermolaeva, G. Vladimirov, S. Gordleeva, A. Svistunov, A. Zaikin, and P. Timashev, "A Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism for Hyperlipidemia Therapy", PLOS ONE e0264902 (2022). |
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154. Borg, Y., Alsford, S., Pavlika, V., Zaikin, A., Nesbeth, D.N., Synthetic biology tools for engineering Goodwin oscillation in Trypanosoma brucei brucei, Heliyon 8, E08891 (2022). |
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153. Y. Tsybina, I. Kastalskiy, M. Krivonosov, A. Zaikin, V. Kazantsev, A. Gorban, and S. Gordleeva, "Astrocyte mediate analogous memory in a multi-layer neuron-astrocytic network", Neural Computing and Applications 34, 9147-9160 (2022). |
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152. V. Demichev et al., "A proteomic survival predictor for COVID-19 patients in intensive care", PLOS Digital Health, (2022). https://doi.org/10.1371/journal.pdig.0000007 |
| 2021 | |
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151. *Nikolay М. Bulanov, Alexander Yu. Suvorov, Oleg B. Blyuss, Daniil B. Munblit, Denis V. Butnaru, Maria Yu. Nadinskaia, Alexey A. Zaikin, "Basic principles of descriptive statistics in medical research", Sechenov Medical Journal 12(3), 4-16 (2021). |
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150. *Nikolay М. Bulanov, Oleg B. Blyuss, Daniil B. Munblit, Nikita A. Nekliudov, Denis V. Butnaru, Khava B. Kodzoeva, Maria Yu. Nadinskaia, Alexey A. Zaikin, "Studies and research design in medicine", Sechenov Medical Journal 12(1), 4-17 (2021). |
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149. Langzhou Liu, Huayi Gao, Alexey Zaikin, Shangbin Chen, "Unravelling Aβ-mediated multi-pathway calcium dynamics in astrocytes: Implications for AD treatment from simulations", Frontiers in Physiology 12, 767892 (2021). |
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148. Tatiana Nazarenko, Harry James Whitwell, Oleg Blyuss, Alexey Zaikin, "Parenclitic and Synolytic networks revisited", Frontiers in Genetics 12, 733783 (2021), doi: 10.3389/fgene.2021.733783. |
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147. T. Nazarenko, O. Blyuss, H. Whitwell, and A. Zaikin, "Ensemble of correlation, parenclitic and synolitic graphs as a tool to detect universal changes in complex biological systems, Comment", Physics of Life Reviews 38, 120-123 (2021). DOI: 10.1016/j.plrev.2021.05.009 |
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146. Demichev, V., Tober-Lau, P., Lemke, O., Nazarenko, T., Thibeault, C., Whitwell, H., . . A. Zaikin, ... Schmidt, S. A time-resolved proteomic and prognostic map of COVID-19. Cell Systems 12, 780- 794 (2021), http://dx.doi.org/10.1016/j.cels.2021.05.005 |
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145. O. Vershinina, M. G. Bacalini, A. Zaikin, C. Franceschi & M. Ivanchenko, Disentangling age‐dependent DNA methylation: deterministic, stochastic, and nonlinear, Scientific Reports 11, 9201 (2021). https://doi.org/10.1038/s41598-021-88504-0 |
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144. Susan Gordleeva, Yulia A Tsybina, Mikhail I Krivonosov, Mikhail V Ivanchenko, Alexey A Zaikin, Victor B Kazantsev, Alexander N Gorban, Modelling working memory in spiking neuron network accompanied by astrocytes, Frontiers in Cellular Neuroscience 15, 631485 (2021). doi: 10.3389/fncel.2021.631485 |
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143. P. Shinde, H.J. Whitwell, R.K. Verma, M. Ivanchenko, A. Zaikin, and S. Jalan. "Impact of modular mitochondrial epistatic interactions on the evolution of human subpopulations", Mitohodrion 58, 111-122 (2021). https://doi.org/10.1016/j.mito.2021.02.004 |
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142. Luis Abrego, Susanna Gordleeva, Oleg Kanakov, Mikhail Krivonosov, Alexey Zaikin. Estimating integrated information in bidirectional neuron-astrocyte communication. Physical Review E 103, 022410 (2021). |
| 2020 | |
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141. *Nikolay М. Bulanov, Oleg B. Blyuss, Daniil B. Munblit, Tatiana V. Nazarenko, Denis V. Butnaru, Maria Yu. Nadinskaia, Alexey A. Zaikin, "Venn diagrams and probability in clinical research", Sechenov Medical Journal 11(4), 5-14 (2020). |
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140. Krivonosov, M., Nazarenko, T., Bacalini, M. G., Zaikin, A., Ivanchenko, M., & Franceschi, C. (2020). Network markers of DNA methylation in neurodegenerative diseases. Conference Proceedings - 4th Scientific School on Dynamics of Complex Networks and their Application in Intellectual Robotics, DCNAIR 2020, 138-139. doi:10.1109/DCNAIR50402.2020.9216911 |
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139. Tsybina, Y., Krivonosov, M., Gordleeva, S., Zaikin, A., & Gorban, A. (2020). Short-term memory in neuron-astrocyte network. Conference Proceedings - 4th Scientific School on Dynamics of Complex Networks and their Application in Intellectual Robotics, DCNAIR 2020, 245-247. doi:10.1109/DCNAIR50402.2020.9216909 |
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138. O. Kanakov, S. Gordleeva, and A. Zaikin, Integrated Information in the Spiking-Bursting Stochastic Model, Entropy 22 (12), 1334 (2020). https://doi.org/10.3390/e22121334 |
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137. Susanna Gordleeva, Oleg Kanakov, Mikhail Ivanchenko , Alexey Zaikin and Claudio Franceschi, " Brain aging and garbage cleaning: Modelling the role of sleep, glymphatic system, and microglia senescence in the propagation of inflammaging", Seminars in Immunopathology 42(5), 647-665 (2020). |
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136. Aleksandra Gentry-Maharaj, Oleg Blyuss, Andy Ryan, Matthew Burnell, Chloe Karpinskyj, Richard Gunu, Jatinderpal K Kalsi, Anne Dawnay, Ines P Marino, Ranjit Manchanda, Karen Lu, Wei-Lei Yang, John F Timms, Max Parmar, Steven J Skates, Robert C Bast, Ian J Jacobs, Alexey Zaikin, Usha Menon, " Multi-Marker Longitudinal Algorithms Incorporating HE4 and CA125 in Ovarian Cancer Screening of Postmenopausal Women", Cancers 12(7), 1931 (2020). |
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135. Chen S, Zaikin A. Editorial: Multiscale Modeling of Rhythm, Pattern and Information Generation: from Genome to Physiome. Frontiers in Physiology 11, 281 (2020). |
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134. Harry Whitwell, Maria Giulia Bacalini, Oleg Blyuss, Shangbin Chen, Paolo Garagnani, Susan Yu Gordleeva, Sarika Jalan, Mikhail Ivanchenko, Oleg Kanakov, Valentina Kustikova, Ines P Mariño, Iosif Meyerov, Ekkehard Ullner, Claudio Franceschi, and Alexey Zaikin, "The human body as a super network: digital methods to analyse propagation of ageing", Frontiers in Ageing Neuroscience 12, 136 (2020). |
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133. I. Korsunskiy, O. Blyuss, M. Gordukova, N. Davydova, A. Zaikin, N. Zinovieva, S. Zimin, R. Molchanov, A. Salpagarova, A. Eremeeva, M. Filipenko, A. Korsunskiy, P. Hsu, and D. Munblit , "Expanding TREC utility in primary immunodeficiency diseases diagnosis", Frontiers in Immunology 11, 320 (2020). |
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132. Harry Whitwell, Jenny Worthington, Oleg Blyuss, Aleksandra Gentry-Maharaj, Andy Ryan, Richard Gunu, Jatinderpal Kalsi, Usha Menon, Ian Jacobs, Alexey Zaikin, and John Timms, "Improved Early detection of Ovarian Cancer Using Longitudinal Multimarker Models", British Journal of Cancer 122, 847-856 (2020). |
| 2019 | |
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131. Oleg Blyuss, Alexey Zaikin, Valeriia Cherepanova, Daniel Munblit, Elena Kiseleva, Olga Prytomanova, Stephen W Duffy, and Tatjana Crnogorac-Jurcevic, "Development of PancRISK, a urine biomarker-based risk score for stratified screening of pancreatic cancer patients", British Journal of Cancer 122(5), 692-696 (2019). |
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130. P. Shinde, L. Marrec, A. Rai, R. Kumar, A. Yadav, A. Zaikin, S. Jalan, “Symmetry in cancer networks identified: Proposals for multi-cancer biomarkers”, Network Science 7(4), 541-555, (2019). |
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129. S. Gordleeva, Y. Lotareva, M. Krivonosov, A. Zaikin, M. Ivanchenko, and A. Gorban, "Astrocyte organize associative memory", in "Advances in Neural Computation, Machine Learning, and Cognitive Research III", Springer Nature p. 384 (2019). |
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128. L. Abrego, and A. Zaikin, ''Integrated Information as a Measure of Cognitive Processes in Coupled Genetic Repressilators'', Entropy 21(4), 382 (2019). |
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127. O. Kanakov, S. Gordleeva, A. Ermolaeva, S. Jalan, A. Zaikin, ''Astrocyte-induced positive integrated information in neuron-astrocyte ensembles'', Physical Review E 99, 012418 (2019). |
| 2018 | |
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126. Kustikova V., Krivonosov M., Pimashkin A., Denisov P., Zaikin A., Ivanchenko M., Meyerov I., Semyanov A. ''CalciumCV: Computer vision software for calcium signaling in astrocytes.'' In: van der Aalst W. et al (eds) Analysis of Images, Social Networks and Texts. AIST 2018. Lecture Notes in Computer Science. - Vol. 11179. Springer, Cham. P. 168-179 (2018). |
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125. C. Franceschi, A. Zaikin, S. Gordleeva, M. Ivanchenko, F. Bonifazi, G. Storci, and M. Bonafe, “Imflammageing 2018: An update and a model”, Seminars in Immunology 40, 1-5 (2018). |
|
124. N. Nene, J. Rivington, A. Zaikin, "Sensitivity of asymmetric rate-dependent critical systems to initial conditions: insights into cellular decision making", Physical Review E 98, 022317 (2018). |
|
123. M.A. Vazquez, I.P. Marino, O. Blyuss, A. Ryan, A. Gentry-Maharaj, J. Kalsi, R. Manchanda, I. Jacobs, U. Menon, and A. Zaikin, "A Quantitative performance study of two automatic methods for the diagnosis of ovarian cancer", Biomedical Signal Processing and Control 46, 86-93 (2018). |
|
122. Oleg Blyuss, Ines P. Marino, Matthew Burnell, Aleksandra Gentry-Maharaj, Andy Ryan, Jatinderpal Kalsi, Ranjit Manchanda, John F. Timms, Max Parmar, Steve Skates, Ian Jacobs, Alexey Zaikin, and Usha Menon, ''Comparison of CA125 longitudinal algorithms as a first-line screen for ovarian cancer in the general population'', Clinical Cancer Research 24, 4726-4733 (2018). |
|
121. H.J. Whitwell, O. Blyuss, J.F. Timms, and A. Zaikin, ''Parenclitic networks for predicting ovarian cancer'', Oncotarget 9:32, 22717-22726 (2018). |
|
120. R. Manchanda, O.Blyuss, V.S. Gordeev, F. Gaba, C. Jacobs, M. Burnell, C. Gan, R. Taylor, C. Turnbull, R. Legood, A. Zaikin, A. Antoniou, U. Menon, and I. Jacobs, “Current detection rates and time-to-detection of all identifiable BRCA-carriers in the Greater London population“, Journal of Medical Genetics (in press). |
|
117. W. Stott, S. Campbell, A. Franchini, O. Blyuss, A. Zaikin, A. Ryan, C. Jones, A. Gentry-Maharaj, G. Fletcher, J. Kalsi, S. Skates, M. Parmar, N. Amso, I. Jacobs, U. Menon, “Self-reported transvaginal ultrasound visualization of normal ovaries in postmenopausal women is not reliable: results of expert review of archived images in UKCTOCS“, Ultrasound in Obstetrics and Gynecology 51, 401-408 (2018). |
| 2017 | |
|
119. S. Makovkin, A. Kumar, A. Zaikin, S. Jalan, and M. Ivanchenko, “Multiplexing topologies and timescales: the gains and losses of synchrony”, Phys. Rev. E 96, 052214 (2017). |
|
118. A. Kumar, M.S. Baptista, S. Jalan, and A. Zaikin, “Mirror nodes correlations tuning synchronization in multiplex networks”, Phys. Rev. E 96, 062301 (2017). |
|
116. I.P. Marino, A. Zaikin, and J. Miguez, “A comparison of Monte-Carlo Bayesian parameter estimation methods for stochastic models of genetic networks”, PLOS ONE 12(1), e0169661 (2017). |
|
115. ”A. Ryblov, S. Kolesov, E. Fedulova, N. Karyakin, M. Ivanchenko, and A. Zaikin. Comparison of machine learning methods for analysis of ulcerative colitis proteomic data”, Opera Medica et Physiologica 3, 25-29 (2017). |
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114. A. Karsakov, T. Bartlett, I. Meyerov, A. Zaikin, and M. Ivanchenko, ”Parenclitic network analysis of methylation data for cancer identification”, PLOS ONE 12(1), e0169661 (2017), IF2015-3.06. |
|
113. L. Abrego, A. Zaikin, ”Decision making in an intracellular genetic classifier under the influence of intrinsic noise”, Mathematical Modelling of Natural Phenomena 12, No 4, 30-42 (2017). |
|
112. Martin Widschwendter, Daniel Schramek, Alexey Zaikin, Evangelia-Ourania Fourkala, Stefan Kiechl, Johann Willeit, Siegfried Weger, Agnes Mayr, Andrew Teschendorff, Adam Rosenthal, Lindsay Fraser, Susan Philpott, Louis Dubeau, Mohammed Keshtgar, Rebecca Roylance, Usha Menon, Ian J. Jacobs, Georg Schett, and Josef M. Penninger, ”Aberrant regulation of RANKL/OPG in women at high risk of developing breast cancer”, Oncotarget 8(3), 3811-3825 (2017), IF2015-5.00. |
| 2016 | |
|
111. I. P. Marino, O. Blyuss, A. Ryan, A. Gentry-Maharaj, J. Timms, A. Dawnay, J. Kalsi, I. Jacobs, U. Menon, and A. Zaikin. ”Changepoint of multiple biomarkers in women with ovarian cancer”, Biomedical Signal Processing and Control 33, 169-177 (2016), IF2015-1.5. |
|
110. Darren Nesbeth, Alexey Zaikin, Yasushi Saka, Mamen Romano, Claudiu Giuraniuc, Oleg Kanakov, and Tetyana Laptyeva, ”Engineering complexity: synthetic biology routes to bio-artificial intelligence”, Essays in Biochemistry 60, 381-391 (2016), IF-3.4. |
|
109. Anil, Zaikin, Kurths, Jalan, ”Interplay of degree-degree correlation and driven mechanism for cluster synchronization”, Phys. Rev. E 94, 062202 (2016), IF2014-2.29. |
|
108. T. Bartlett, and A. Zaikin, ”Detection of Epigenomic Network Community Oncomarkers”, Annals of Applied Statistics 10, 1373-1396 (2016), IF2015-1.47. |
|
107. Y. Borg, A. Grigonyte, P. Boeing, B. Wolfenden, P. Smith, W. Beaufoy, S. Rose, T. Ratisai, A. Zaikin, and D.N. Nesbeth, ”Open source approaches to establishing Roseobacter clade bacteria as synthetic biology chassis for bioengineering”, PeerJ (2016), IF2015-2.19. |
|
106. E.-O. Fourkala, O. Blyuss, H. Field, R. Gunu, A. Ryan, J. Barths, I. Jacobs, A. Zaikin, A. Dawnay, and U. Menon, ”Sex hormone measurements using mass spectrometry and sensitive radioimmunoassays and risk of estrogen receptor negative and positive breast cancer: Case control study in Uk Collaborative Cancer Trial of Ovarian Cancer Screening (UKCTOCS)”, Steroids 110, 62-69 (2016). |
|
105. V. Samborska, S. Gordleeva, E. Ullner, A. Lebedeva, V. Kazantzev, M. Ivancheno, and A. Zaikin, ”Mammalian brain as networks of networks", Opera Medica & Physilogica 1, 23-38 (2016). |
|
104. A. Polovinkin, I. Krylov, P. Druzhkov, M. Ivanchenko, I. Meyerov, A. Zaikin, N. Zolotykh, ”Solving Problems of clustering and classification of cancer diseases based on DNA methylation data”, Pattern Recognition and Image Analysis, Vol. 26, No. 1, pp. 129-133 (2016). |
|
103. K.B. Blyuss, R. Manchanda, J. Kurths, A. Alsaedi, and A. Zaikin, ”Systems medicine of cancer: bringing together clinical data and nonlinear dynamics of genetic networks”, Computational and Mathematical Methods in Medicine (in press). |
|
100. S.Yu. Filicheva, A. Zaikin, O.I. Kanakov, ”Dynamical decision making in a genetic perceptron”, Physica D, Vol. 318-319, 112-115 (2016), IF-1.6. |
| 2015 | |
|
102. O. Blyuss, A. Gentry-Maharaj, E.O. Fourkala, A. Ryan, A. Zaikin, U. Menon, I. Jacobs, J.F. Timms, ”Serial patterns of ovarian cancer biomarkers in a pre-diagnosis longitudinal dataset”, Biomed Research International (in press). |
|
101. P. Druzhkov, N. Zolotyh, I. Meyerov, A. Alsaedi, M. Shutova, M. Ivanchenko, and A. Zaikin, ”Variations in the intra-gene methylation profiles hallmark induced pluripotency”, Biomed Research International vol. 2015, article ID 976362, 9 pages, 2015. |
|
99. James, C. P., Stevens, J., Blyuss, O., Syngelaki, A., Nicolaides, K., Zaikin, A., & Peebles, D. M. (2015). ”GWAS Identified Inflammatory Polymorphisms Do Not Improve Clinical Markers for Predicting Preterm Birth in an Antenatal Population”. REPRODUCTIVE SCIENCES, 22, 135A. |
|
98. R. Bates, O.Blyuss, A. Alsaedi, and A.Zaikin, ”Effect of noise in intelligent cellular decision making”, PLOS ONE (in press). |
|
97. Oleg Kanakov, Roman Kotelnikov, Ahmed Alsaedi, Lev Tsimring, Ramon Huerta, Alexey Zaikin, Mikhail Ivanchenko, ” Multi-input distributed classifier for synthetic genetic circuit”, PLOS ONE DOI:10.1371/journal.pone.0125144, (2015). |
|
96. P. Ashwin and A. Zaikin, ”Pattern selection: the importance of ”how you get there”, Biophysical Journal 108, 1307-1308 (2015), IF 2013 - 3.8. |
|
92. D.P.O’Brien, N.S. Sandanayake, A. Gentry-Maharaj, S. Apostolidou, E. O. Fourkala, S. Camuzeaux, O. Blyuss, R. Gunu, A. Dawnay, A. Zaikin, I.J. Jacobs, U. Menon, E. Costello, S.P. Pereira, J. F. Timms, ”Serum CA19-9 is significantly up-regulated up to 2 years prior to diagnosis with pancreatic cancer: implications for early disease detection”, Clinical Cancer Research 21, 622 (2015), IF-7.8, SJR=5.15. |
| 2014 | |
|
95. T.E. Bartlett, S.C. Olhede, and A. Zaikin, “Novel Statistical Network Methodology to Identify and Analyse Cancer Biomarkers”, JSM Proceedings 2014, Section on Statistics in Epidemiology 3515 |
|
94. A. Alsaedi, A.Zaikin, B. Ahmad, F. Alsaadi, and M. El-Shahed, ”Fractional calculus model of GATA-switching for regulation the differentiation of a hematopoietic stem cell”, Advances in difference equations, 2014:201, IF=0.634. |
|
93. H. Alshaker, J. Krell, A. Frampton, J. Waxman, O. Blyuss, A. Zaikin, M. Winkler, J. Stebbing, E. Yague, D. Pchejetski, ”Leptin induces upregulation of sphingosine kinase 1 in oestrogen receptor-negative breast cancer via Src family kinase-mediated, janus kinase 2-independent pathway” Breast Cancer Research 16, 426 (2014). IF=5.88, SJR=3.209. |
|
91. R. Bates, O. Blyuss, and A. Zaikin,” Stochastic resonance in an intracellular genetic perceptron”, Phys. Rev. E, 89, 032716 (2014). |
|
90. Y. Borg, E. Ullner, A. Alagha, A. Alsaedi, D. Nesbeth, and A. Zaikin, “Complex and Unexpected dynamics in Simple Genetic Regulatory Networks”, IJMPB 28, 1430006 (2014). |
|
89. T. Bartlett, S. Olhede, and A. Zaikin, " A DNA methylation network interaction measure, and detection of network oncomarkers", PLOS ONE 9, e84573 (2013). |
|
85. Johannes W. Pedersen, Aleksandra Gentry-Maharaj, Alexander Nostdal, Evangelia-Ourania Fourkala, Anne Dawnay, Matthew Burnell, Alexey Zaikin2, Joy Burchell, Joyce Taylor Papadimitriou, Henrik Clausen, Ian Jacobs, Usha Menon, and Hans Wandall, "Cancer associated auto-antibodies to MUC1 and MUC4 - A blinded case control study of colorectal cancer in UK Collaborative Trial of Ovarian Cancer Screening (UKCTOCS)", International Journal of Cancer (in press), IF=6.1 |
| 2013 | |
|
88. A. Alagha, A. Zaikin, "Asymmetry in Erythroid-Myeloid differentiation switch and the role of timing in a binary cell fate decision", Frontiers in Immunology 4, 426 (2013). |
|
87. I.P. Marino, E. Ullner, and A. Zaikin, "Parameter estimation methods for chaotic intercellular networks", PLOS ONE 8, e79892 (2013). |
|
86. M. Widschwendter, A.N. Rosenthal, S. Philpott, M.I. Rizzuto, L. Fraser, J. Hayward, M.P. Intermaggio, C.K. Edlund, S.J. Ramus, S. A. Gayther, L. Dubeau, E.O. Fourkala, A. Zaikin, U. Menon, and I. J. Jacobs, "The sex hormone system in BRCA1/2 mutation-carriers: a case-control study", The Lancet Oncology 14, 1226 (2006), IF=25.11. |
|
84. T.E. Bartlett, A. Zaikin, J. West, A. Teschendorff, M. Widschwendter, "Intra-gene methylation architecture is a better determinant of tissue as tumour or healthy than per-gene mean methylation levels" PLOS One 8, e68285 (2013) , IF=4.09. |
|
83. N. Nene, A. Zaikin, "Decision making in bistable systems under the effect of external transient perturbations", Phys. Rev. E 87, 012715 (2013), IF=2.3. |
|
82. Johannes W. Pedersen, Aleksandra Gentry-Maharaj*, Evangelia-Ourania Fourkala, Anne Dawnay2, Matthew Burnell, Alexey Zaikin2, Anders E. Pedersen, Ian Jacobs, Usha Menon*, and Hans Wandall, "Early detection of cancer in the general population - a blinded case control study of p53 auto-antibodies in colorecta cancer", British Journal of Cancer 108, 107014 (2013), IF=5.08. |
| 2012 | |
|
81. E. Ullner, S. Ares, L.G. Morelli, A.S. Oates, F. Julicher, E. Nicola, R. Heussen, D. Whitmore, K. Blyuss, M. Fryett, A. Zakharova, A. Koseska, N.R. Nene, and A. Zaikin, "Noise and oscillations in biological systems: multidisciplinary approach between experimental biology, theoretical modelling and synthetic biology", International Journal of Modern Physics B 26, 1246009 (2012). |
|
80. N. Nene, A. Zaikin, "Interplay between Path and Speed in Decision Making by High-Dimensional Stochastic Gene Regulatory Networks", PLoS ONE 7, e40085 (2012), IF=4.09. |
|
79. E.-O. Fourkala, A. Zaikin, M. Burnell, A. Gentry-Maharaj, J. Ford, R. Gunu, C. Soromani, G. Hasenbrink, I. Jacobs, A. Dawnay, M. Widschwendter, H. Lichtenberg-Frate and U. Menon, "Association of serum sex steroid receptor bioactivity and sex steroid hormones with breast cancer risk in postmenopausal women", Endocrine-Related Cancer 19, 137-147 (2012), IF=5.2. |
|
78. N. Nene, J. Garcia-Ojalvo, and A.Zaikin, "Speed-dependent cellular decision making in nonequilibrium genetic circuits", PLoS ONE 7, e40085 (2012), IF=4.09. |
| 2011 | |
|
77. R. Heussen, T.K. Tamai, D. Whitmore, A. Zaikin, "Modelling approaches of the circadian clock and light entraintment in zebrafish", Proceedings of the 5th International conference "Physics and Control", IPACS electronic library, (in press). |
| 2010 | |
|
76. Tieri P, Grignolio A, Zaikin A., Mishto M., Remondini D, Castellani GC, Franceschi C. "Network, degeneracy, and bow-tie integrating paradigms and architectures to grasp the complexity of the immune system", Theoretical Biology and Medical Modelling 7:32, (2010). |
|
75. *N.R. Nene, A. Zaikin, "Gene regulatory network attractor selection and cell fate decision: insights into cancer multi-targeting", Proceedings of Biosignal 2010, July 14-16, Berlin, Germany (2010). |
|
74. E. Long, B. Henderson, A. Zaikin, "In silico analysis of microdimain-mediated trimer formation in the T cell membrane", European Physical Journal, Special Topics 187, 21 (2010). |
|
73. J. Liepe, M. Mishto, K. Textoris-Taube, K. Janek, C. Keller, P. Henklein, P.M. Kloetzel, and A. Zaikin, ”The 20S Proteasome Splicing Activity Discovered by SpliceMet”, PLOS Computational Biology, Vol. 6, e1000830 (2010). |
|
72. E. Cevenini, E. Bellavista, P. Tieri, G. Castellani, F. Lescai, M. Francesconi, M. Mishto, A. Santoro, S. Valensin, S. Salvioli, M. Capri, A. Zaikin, D. Monti, J. P. de Magalhгes and C. Franceschi, "Systems Biology and Longevity: an emerging approach to identify innovative anti-aging targets and strategies", Current Pharmaceutical Design 16, N 7, 802-813 (2010). |
| 2009 | |
|
71. D.S. Goldobin and A. Zaikin, "Towards quantitative prediction of proteasomal digestion patterns of proteins", J. Stat. Mechanics P01009, (2009). |
|
70. A. Koseska, A. Zaikin, J. Kurths, and J. Garcia-Ojalvo, "Timing cellular decision making under noise via cell-cell communication", PLOS One 4, e4872 (2009). |
|
69. *E. Ullner, A. Koseska, A. Zaikin, E. Volkov, J. Kurths, J. Garcia-Ojalvo, "Dynamics of multicellular synthetic gene networks", in Handbook on Biological Networks, World Scientific Lecture Notes in Complex Systems, Vol.10, pp 33-58, World Scientific Books (2009). |
| 2008 | |
|
68. *Mishto M., Luciani F., Holzhuetter H.G., Bellavista E., Santoro A., Textoris-Taube K., Kloetzel P.M., Zaikin A. and Franceschi C. (2008): ProteaMAlg: a Proteasome Modelling Algorithm to address the complexity of intracellular protein degradation kinetics. Biocomplexity at the cutting edge of Physics, System Biology and Humanities. Bologna University Press. |
|
67. M. Mishto, F. Luciani,
E. Bellavista, A. Santoro, K. Textoris-Taube, H.G. Holzhütter,
P.M. Kloetzel and C. Francheschi, and A. Zaikin, "Proteamalg: a tool to
investigate in vitro 20S proteasome and PA28ąß
activity and to predict the effects of polypeptide sequence and
length", Journal of Molecular Biology 377, 1607-1617 (2008). |
|
66. M. Ruskoni, A. Zaikin, N. Marwan, and J. Kurths, "Effect of Stochastic Resonance on Bone Loss in Osteopenic Conditions” Phys. Rev. Lett. 100, 128101 (2008).
100, 128101 (2008). |
| 2007 | |
|
65. A. Koseska, A. Zaikin, J. Garcia-Ojalvo, and J. Kurths, ”Stochastic suppression of gene expression oscillations under intercell coupling”, Phys. Rev. E 75, 031917 (2007). |
|
64. *A. Zaikin, F. Luciani, J. Kurths, "Constructing a Virtual Proteasome", in "Biosimulation in Drug Development", Wiley-VCH, (2007). |
| |
63. E. Ullner. A. Zaikin, E.I.
Volkov, and J. Garcia-Ojalvo, "Multistability and clustering in a
population of synthetic genetic oscillators via phase
repulsive cell-to-cell communication", Phys. Rev. Lett. 100, 128101
(2008). |
|
62. A. Koseska, E. Volkov, A. Zaikin, and J. Kurths, ”Inherent multistability in arrays of autoinducer coupled genetic oscillators”, Phys. Rev E 75, 031916 (2007). |
| |
61. *A. Zaikin, A. Koseska, J. Garcia-Ojalvo, M. Mishto, J. Kurths, “Nonlinear dynamics effects in synthesis and degradation of proteins”, in "Science and Supercomputing in Europe", Transnational access, CINECA Consorzio Interuniversitario, ISBN 978-88-86037-21-1, 779-783 (2007). |
|
60. *A. Koseska, A. Zaikin, J. Liepe, and J. Kurths, "Variety of dynamical regimes in a population of coupled synthetic genetic oscillators", Proceedings of the 3rd International conference "Physics and Control", IPACS electronic library, http://lib.physcon.ru/?item=1376, (2007). |
|
59. A. Koseska, E. Volkov, A. Zaikin, and J. Kurths, "Quantized time production cycling time in artificial gene networks induced induced by noise and intercell communication", Phys. Rev E 76, 020901 (2007), also in the September 1, 2007 issue of Virtual Journal of Biological Physics Research. |
|
58. *M. Mishto, Zaikin, A., Luciani F., Holzhьtter H.G., Bellavista E., Santoro A., Textoris-Taube K., Franceschi C., Kloetzel P.M. (2007): Proteasome Modeling Algorithm to predict in vitro kinetics of 20S proteasome degradation. The 3rd International IEEE Scientific Conference on Physics and Control – Physcon: report 2007. |
| 2006 | |
| |
57. A. Zaikin, A.K. Mitra, D. Goldobin, J. Kurths, ''Influence of transport rates on the protein degradation by the proteasome", Biophysical Reviews and Letters, 1: 375-386 (2006). |
| |
56. A. Zaikin, J. Kurths, ”Optimal length transportation hypothesis to model proteasome product size distribution”, Journal of Biological Physics 32, 231-243, (2006). |
|
55. *A. Zaikin, ”Control of synchronization in inhibitory coupled genetic oscillators”, in “Science and super computing in Europe”, Cineca, ISBN 88-86037-17-1, 531-535, (2006). |
| |
54. *F. Luciani, A. Zaikin, ”Mathematical models of the proteasome product size distribution”, in “Irreversible Prozesse und Selbstorganisation”, Logos-Verlag, Berlin, 195-209, (2006). |
| |
53. C.J. Tessone, E. Ullner, A. Zaikin, J. Kurths, and R. Toral, ”Noise-induced inhibitory suppression of frequency-selective stochastic resonace”, Phys. Rev. E 74, 046220 (2006). |
| |
52. E. Glatt, H. Busch, F. Kaiser, and A.Zaikin, ”Noise-memory induced excitability and pattern formation in oscillatory neural models”, Phys. Rev. E 73, 026216 (2006). |
| 2005 | |
|
51. A. Zaikin and T. Poeschel, ”Peptide size dependent active transport in the proteasome”, Europhysics Letters 69, 725 (2005). |
|
50. T. Poeschel, T. Schwager, N.V. Brilliantov, A. Zaikin, ”Rolling friction and bistability of rolling motion”, In: "Proc. Powders & Grains 2005”, (Kongressband) Balkema roterdam, 1247 (2005). |
|
49. P. Saparin, J.S. Thomsen, S. Prohaska, A. Zaikin, J. Kurths, H.C. Hege, and W. Gowin, ”Quantification of Spatial Structure of Human Proximal Tibial Bone Biopsies Using 3D Measures of Complexity”, Acta Astronautica 56, 820 (2005). |
|
48. A. Zaikin, P.Saparin, J. Kurths, S. Prohaska, and W.Gowin, ”Modeling resorption in 2D CT and 3D CT bone images”, Int. J. of Bif. and Chaos, 15, 2995-3009, (2005). |
|
47. T. Poeschel, N. Brilliantov, and A. Zaikin, ”Bistability and noise-enhanced velocity of rolling motion”, Europhysics Letters 69, 371-377 (2005). |
| 2004 | |
|
46. E.Ullner, A. Zaikin, J. Garcia-Ojalvo, and J. Kurths , ”Signal propagation in oscillatory media enabled by noise-induced excitability”, Proc. of SPIE 5417, 102 (2004), DOI: 10.1117/12.546658. |
| 2003 | |
| |
45. E.I. Volkov, E. Ullner, A.
Zaikin, and J. Kurths, ``Frequency-dependent stochastic resonance in
inhibitory coupled excitable systems'', Phys. Rev. E 68, 061112 (2003). |
|
44. E.I. Volkov, M.N. Stolyarov, A. A. Zaikin, and J. Kurths, "Coherence resonance and polymodality in inhibitory coupled excitable oscillators", Phys. Rev. E 67, 066202 (2003). |
|
43. E. Ullner, A.Zaikin, R.Bascones, J. Garcia-Ojalvo, and J. Kurths, "Vibrational resonance and propagation in excitable systems", Physics Letters A 312, 348-354 (2003). |
|
42. J.P. Baltanas, L. Lopez, I.I. Blechman, P.S. Landa, A. Zaikin, J. Kurths, and M.A.F. Sanjuan, "Experimental evidence, numerics, and theory of vibrational resonance in bistable systems", Phys. Rev. E 67, 066119 (2003). |
|
41. A. Zaikin, J. Garcia-Ojalvo, L. Schimansky-Geier, and J. Kurths, "Twofold role of noise in doubly stochastic effects", Noise in complex systems and stochastic dynamics proceedings of the society of photo-optical instrumentation engineers (SPIE) 5114, 182-192, 2003. |
|
40. E.I. Volkov, E. Ullner, A.A. Zaikin, and J. Kurths, "Oscillatory amplification of stochastic resonance in excitable systems", Phys. Rev. E 68, 026214 (2003). |
|
39. *A. Zaikin, W. Gowin, S. Prohaska, and J. Kurths, “2D bone modeling for analysis of changes in bone architecture and for evaluation of structural measures”, in “Achievements in space medicine into health care practice and industry”, proceedings of 2nd European Congress, Berlin 27-29 March, (2003). |
|
38. A. M. Correig, M. Urguizu, V.B. Ryabov, and A.A. Zaikin, "On the dynamics of microseism time series", Chaos, Solitons, and Fractals, 16, 195-210 (2003). |
|
37. A. Zaikin, J. Garcia-Ojalvo, R.Bascones, E. Ullner, and J. Kurths, “Doubly stochastic coherence via noise-induced symmetry in bistable neural models”, Phys. Rev. Lett. 90, 030601 (2003). |
|
36. E. Ullner, A. Zaikin, J. Garcia-Ojalvo, and J. Kurths, “Noise-Induced Excitability in Oscillatory Media”, Phys. Rev. Lett. 91, 180601 (2003). |
|
35. A. Pikovsky, A. Zaikin, "System size stochastic and coherence resonances", Unsolved problems of noise and fuctuations, AIP Conference Proceedings 665, 561-568, 2003. |
| 2002 | |
| |
34. A.Zaikin, "Doubly
stochastic effects", Fluctuations and Noise Letters,
Vol.2 No.3 , L157-L169 (2002). |
|
33. Landa P.S. and Zaikin A., Fluctuational transport of a Brownian particle in ratchet-like gravitational potential field , Chaos, Solitons & Fractals, 13 (1) (2002) pp. 109-113. |
|
32. A. Zaikin, J. Garcia-Ojalvo, L. Schimansky-Geier, and J. Kurths, "Noise-induced propagation in monostable media", Phys. Rev. Lett. 88, 010601 (2002). |
|
31. J.P. Baltanas, A.Zaikin, F.Feudel, J.Kurths, and M.A.F. Sanjuan, "Noise-induced effects in tracer dynamics", Physics Letters A 297 396-401 (2002) |
|
30. A. Zaikin, D. Topaj, and J. Garcia-Ojalvo, "Noise-induced propagation of bichromatic signals", Fluctuations and Noise Letters 2, L47-52 (2002). |
|
29. A. Pikovsky, A.Zaikin, and M.A. de la Casa, "System size resonance in coupled noisy systems", Phys. Rev. Lett. 88, 050601 (2002). |
|
28. A. A. Zaikin, L. Lopez, J.P. Baltanas, J. Kurths, and M.A.F. Sanjuan, "Vibrational resonance in noise-induced structures", Phys. Rev. E 66, 011106 (2002). |
|
27. *A. Zaikin, P. Saparin, S. Prohaska, J. Kurths, W. Gowin, "Bone modeling and structural measures of complexity", Procedings of the "Symposium Life in Space for Life on Earth", Stockgolm, J. Grav. Physiol. 9(1):P175-P176, July, 2002. |
|
26. W. Gowin, P. Saparin, D. Felsenberg, J. Kurths, A. Zaikin, S. Prohaska, H.-C. Hege, "Regional Structural Skeletal Discordance Assessed by Measures of Complexity", in Osteoporosis Int 13, 2002, Supplement 1, page S123, Proceedings of the World Congress on Osteoporosis, Lisbon, May 2002. |
| 2001 | |
|
25. Landa P.S., Zaikin A. and Schimansky-Geier L., "Effect of the potential shape and of a Brownian particle mass on noise-induced transport", Chaos, Solitons and Fractals, 12 (8) (2001) pp. 1459-1471. |
|
24. A.A. Zaikin, and J. Kurths,
"Additive noise in Noise-induced Nonequilibrium Transitions",
CHAOS 11(3), 570 (2001). |
|
23. A.A. Zaikin, K. Murali, and J. Kurths, "A Simple Electronic Circuit Model for Doubly Stochastic Resonance", Phys. Rev. E, Rapid Communication 63, 020103 (R) (2001). |
| 2000 | |
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22. A. Zaikin , J. Kurths , and L. Schimansky-Geier, "Doubly Stochastic Resonance", Phys. Rev. Lett. 85, 227 (2000). |
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21. Landa,P.S., Zaikin,A.A., Ushakov,V.G. and Kurths,J., "Infuence of additive noise on transitions in nonlinear systems", Phys. Rev. E, Vol. 61, 5, 4809 (2000). |
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20. *Landa, P.S., Zaikin, A.A., and Kurths, J., "On Noise-induced Transitions in Nonlinear Oscillators", in "Stochastic Processes in Physics, Chemistry, and Biology", Editors: J.A. Freund, T. Poeschel, Springer (2000). |
| 1999 | |
| 1999 |
|
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18. P.S. Landa, A.A. Zaikin, A.S. Ginevsky, and Ye.V. Vlasov, "Turbulence and coherent structures in subsonic submerged jets. Control of the turbulence.", Int. J. of Bif. and Chaos, Vol.9, No.2, pp. 397-414 (1999). |
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17. A.A. Zaikin, J. Kurths, "
Modeling Cognitive Control in Simple Movements", in "Computing
Anticipatory systems", AIP Conference Proceedings 517, 372-382 (1999). |
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16. A.A. Zaikin, J. Kurths, "Additive Noise and Noise-induced Nonequilibrium Phase Transitions", in "Unsolved Problems of Noise and fluctuations", edited by D. Abbott and L.B. Kish, AIP Conference Proceedings 511, (AIP, Melville, New York, 1999), pp. 303-313. |
| 1998 | |
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15. P.S. Landa, A.A. Zaikin, M.G. Rosenblum, and J.Kurths, "On-off Intermittency Phenomena in a Pendulum with a Randomly Vibrating Suspension Axis", Chaos, Solitons & Fractals, Vol. 9, No.1/2, pp. 157-169, (1998). |
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14. A.A. Zaikin and L. Schimanksy-Geier, "Spatial Patterns Induced by Additive Noise", Phys.Rev.E 58(4),pp. 4355-4360, (1998). |
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13. P.S. Landa, A.A. Zaikin, "Noise-induced Phase Transitions in Nonlinear Oscillators", in "Computing Anticipatory Systems", AIP Conference Proceedings 465, pp. 419, CASYS'98, Liege, Belgium (1998). |
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12. P.S. Landa, A.A. Zaikin, and L. Schimansky-Geier, "Influence of additive noise on noise-induced phase transitions in nonlinear chains", Chaos, Solitons & Fractals, Vol.9, No. 8, pp.1367-1372,(1998). |
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11. A.A. Zaikin, L. Schimansky-Geier, "Ordering Role of Additive Noise in Extended Media", International Journal of Computing Anticipatory Systems, CHAOS, ed. by Daniel M. Dubois, Vol. 3, pp. 251-273 (1998). |
| 1997 | |
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10. P.S. Landa, A.A. Zaikin, M.G. Rosenblum, and J. Kurths, "Control of Noise-induced Oscillations of a Pendulum with a Randomly Vibrating Suspension Axis", Phys. Rev. E. 56(2), pp. 1465-1470, (1997). |
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9. C. Scheffczyk, A. Zaikin, M.Rosenblum, R.Engbert, R.Krampe, and J.Kurths, "Modeling Qualitative Changes in Bimanual Movements", Int. J. of Bif. and Chaos, Vol.7, No.6 , pp. 1441-1450 (1997). |
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8. P.S. Landa and A.A. Zaikin, "Random and chaotic oscillations in the model of childhood infections caused by the seasonal variations of the contact rate", in "Applied Nonlinear Dynamics and Stochastic Systems near Millenium", AIP conference proceedings 411, San-Diego, CA July 1997, pp.321 (1997). |
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7. P.S. Landa and A.A. Zaikin, "Nonequilibrium Noise-induced Phase Transitions in Simple Systems", JETP 84 (1),pp.197-208, (1997), translation of Zh. Eksp. Teor. Fiz. , 1997, t. 111, vup.1, str. 359-378. |
| 1996 | |
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5. P.S. Landa, A.A. Zaikin, "Noise-induced Phase Transitions in a Pendulum with a Randomly Vibrating Suspension Axis", Phys. Rev. E, 54(4), pp. 3535-3544,(1996). |
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4. A.A. Zaikin and O.V. Rudenko, "Shock Wave Effect on Resonance Sound Absorbers", Moscow University, Physics Bulletin, Vol. 50, No.6, pp.35-40, (1995), 1996 by Allerton Press. |
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3. A.A. Zaikin and O.V. Rudenko, "A Nonlinear Model of the Helmholtz Resonator with a Movable Wall", Acoustical Physics, Vol.42, No.3,pp. 329-333 (1996). |
| 1995 | |
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6. Scheffczyk, R. Engbert, R. Krampe, J. Kurths, M. Rosenblum, and A.Zaikin, "Nonlinear Modelling of Polyrhythmic Hand Movements", Medical & Biological Engineering & Computing, Vol. 34, Supplement 1, Part 1, 1996, The 10th Nordic-Baltic Conference on Biomedical Engineering, June 9-13, 1996, Tampere, Finland. |
| 1994 | |
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2. *A.S. Ginevsky, P.S. Landa, and A.A. Zaikin, "Self-excitation of Impinging Jets with Regard to Acoustic Feedback", Proceedings of Third International Congress on Air- and Structure- Borne Sound and Vibrations, June 13-15, Montreal, Canada, (1994), pp. 1191-1196. |
| 1993 | |
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1. A.A. Zaikin and O.V. Rudenko, "Acoustic Nonlinearity of Nonuniform Flow of an Oscillating Liquid", Moscow University, Physics Bulletin, Vol. 48, No. 6, pp. 56-58, (1993),1993 by Allerton Press. |
Qualification works: |
|
| 2003 | |
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Habilitation thesis ”Noise-induced transitions and resonant effects in nonlinear systems” |
| 1998 | |
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PhD thesis ”Noise-induced phase transitions and control of turbulence in submerged jets by acoustic waves” (in Russian). |