Former Members
 
Dr. Robert P. Apaya   Jasbir Bhachoo   Dr Helen H. Y. Tsui
 
Dr. Chitra Medhi   Dr Theresa Beyer   Dr Graeme M. Day
 
Dr Tanja van Mourik   Dr.Irene(Irilenia) Nobeli    
         
Dr. David S. Coombes   Dr John B.O. Mitchell    
 
Dr Robert P. Apaya
Robert completed his Ph.D. thesis entitled "The Electrostatic Interactions of Protein-Binding Ligands" in 1996. Ligands which bind to a specific protein binding site are often expected to have a similar electrostatic environment which complements that of the binding site. This work assesses molecular electrostatic similarity by examining the possible overlay of maxima and minima in the electrostatic potential outside molecules and thereby matching the regions where strong electrostatic interactions, including hydrogen bonds, with the binding site residues may be possible. Despite the structural variation between different ligands, it is possible to match three or four extrema to produce relative orientations in which the inhibitors are sufficiently sterically and electrostatically similar to account for their affinity for a single binding site. 
 
Robert is currently a member of the drug design group(led by Dr P. M. Dean) at the University of Cambridge Pharmacology Department.
 
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Dr David S. Coombes
David completed his Ph.D. Thesis entitled "Towards the a priori prediction of molecular crystal structures" in 1997. This work showed that the combination of an accurate distributed multipole model for the electrostatic forces together with a simple repulsion-dispersion potential is able to reliably predict the structures of a wide range of molecular crystals. This provides a promising start to developing methods of predicting polymorphism

David is currently working on applying computational techniques to modelling the hydrothermal synthesis of minerals with Professor CRA Catlow (The Royal Institution) and Professor G.D. Price (UCL) at the Royal Institution of Great Britain

 
email: davidc@ri.ac.uk
 
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Dr Irene(Irilenia) Nobeli

Irene completed her Ph.D. in December 1998. Her thesis entitled "Characterising organic hydrogen bonds". She is currently a Medical Research Council Research Fellow in the Department of Biochemistry and Molecular Biology at UCL.
 
email: nobeli@biochem.ucl.ac.uk
 
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Dr Chitra Medhi

Dr. Medhi spent a year between September 1998 to September 1999 as a Commonwealth Research Fellow in the group. She is a lecturer in Chemistry at Gauhati University in India. Her research study in the group was on the DNA base acids biding using intermolecular model potentials.
 
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Jasbir Bhachoo

Jas completed her M.Sc. in Chemical Research in 1996. Her thesis, entitled "Stacking interactions in the intercalation of the anti-tumour agent aclacinomycin", describes the use of accurate computational methods (for the first time) to better understand the mode of action of an experimentally used and potent anti-tumor agent. The study involved verifying experimental observations, also undertaken at UCL medicinal chemistry with Dr A Tabor, and predicting electrostatic favourability of intercalation. 

Jas is currently in employment with Biofocus plc Sittingbourne Research Centre in Kent, a Pharmaceutical Contract Research Organisation in Combinatorial and Computational Chemistry, as a modeller and computational chemist. 

 
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Dr John B. O. Mitchell
John joined the group as a postdoctoral research scientist in December 1998. He is now a lecturer at the Unilever Centre for Molecular Informatics in the Chemistry department at the University of Cambridge.
 
His main areas of research are:

(1) Development of accurate and physically realistic intermolecular potential functions. We are seeking to develop intermolecular potential functions, based on monomer properties, which will allow the intermolecular interaction energies to be calculated with an accuracy effectively equivalent to that of ab initio calculations. The potentials will be partitioned into 

(a) Electrostatic energy, based on distributed multipole analysis (DMA), and therefore incorporating atom-atom anisotropy. 

(b) Exchange-repulsion (i.e., the short range repulsive force arising from the Pauli exclusion principle). The functional form will be exponential. We may need to incorporate anisotropy into this term. 

(c) Dispersion (i.e., the universal attractive force arising from electron correlation). The representation of this is based on the leading term in R**-6. We hope to calculate the atom-atom co-efficients of this term (C6) from integrals of distributed polarizabilities at imaginary frequencies. 

(2) Prediction of crystal structures for small organic molecules. We use a DMA-based potential to calculate accurate lattice energies for putative crystal structures, which can be minimised using the program DMAREL. The total energy is approximated by the sum of the ab initio monomer energy and the lattice energy. Of particular interest is the problem of polymorphism, where a molecule is able to crystallise in a plurality of different forms. 

email: jbom1@hermes.cam.ac.uk homepage: www.ch.cam.ac.uk/CUCL/staff/jbom.html
 
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Dr Tanja van Mourik
Tanja
Tanja joined the group as a postdoctoral research scientist in November 1997. She was working under two research groups of Professor S.L. Price and Professor D.C. Clary.

She is now a Royal Society Research Fellow in the Chemistry department at UCL.

 
Her research areas in the group were:
  • Investigation of the interaction of biomolecules with water using ab initio techniques Modification of an existing Diffusion Monte Carlo program [D.M. Benoit], to allow for the use of anisotropic potentials in the DMC simulations Construction of an anisotropic potential for uracil-water.Use of this potential in DMC calculations to obtain vibrationally averaged structures and interaction energies.
email: t.vanmourik.ucl.ac.uk homepage: www.chem.ucl.ac.uk/people/vanmourik/index.html
 
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Dr Theresa Beyer
Theresa
Theresa completed her Ph.D. studies in May 2001. She is now pursuing a career in management consultancy in Germany.
 
Her research interests included

- the development of accurate intermolecular potentials and

- the investigation of additional factors to lattice energy

for crystal structure prediction.

This work was done in collaboration with the Cambridge Crystallographic Data Centre (CCDC).

email: theresa_beyer@web.de
 
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Dr Helen H. Y. Tsui
Helen
Helen completed her Ph.D. in September 2001and wasjoint supervised by Professor S.L. Price and Professor D.C. Clary. Helen is hoping to pursue a career in management consultancy.
 
Her research was based on:

The development of new models for intermolecular repulsion using non-empirical method, and their application to van der Waals complexes and crystals of organic molecules. Simulations of these studies are performed using Diffusion Monte Carlo (DMC) and lattice energy minimisation (DMAREL), and used for validation of model potentials.

email: hhyt@hotmail.com homepage: go.to/helen.tsui
 
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Dr Graeme M. Day
Graeme
Graeme completed his Ph.D. in December 2001. His currently doing a post-doc at the University of Cambridge.
 
His research was based on :

using and developing accurate model potentials to calculate the mechanical and thermodynamic properties of molecular organic crystals from 2nd derivatives of energy.

email: gmd27@cam.ac.uk homepage: http://www.geocities.com/graeme_day
 
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