Table S1.80. Fragment 80 interactions with Asp

Fragment 80
Listed below are the ligands in the PDB that contain the chemical fragment shown on the left and which interact via this fragment with the side chain of a Asp residue via hydrogen bonds.

The PDB codes are hyperlinked to a schematic LIGPLOT diagram in PDBsum.

Ligand Description


  1. Ligand: C
Cytidine-5'-monophosphate
PDB code: 1kdo.


  2. Ligand: 3TC
4-amino-1-[(2r,5s)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]pyrimidin-2(1h)-one
PDB code: 2noa.


  3. Ligand: AR3
Cytarabine
PDB code: 1p5z.


  4. Ligand: CDP
Cytidine-5'-diphosphate
PDB code: 2cmk.


  5. Ligand: DCM
2'-deoxycytidine-5'-monophosphate
PDB code: 1b5e.


  6. Ligand: DCP
2'-deoxycytidine-5'-triphosphate
PDB codes: 1nke, 2hhu.


  7. Ligand: DCT
2',3'-dideoxycytidine 5'-triphosphate
PDB code: 2hvi.


  8. Ligand: DCZ
2'-deoxycytidine
PDB codes: 1p60, 2no1.


  9. Ligand: DOC
2',3'-dideoxycytidine-5'-monophosphate
PDB code: 1kdt.


  10. Ligand: GEO
Gemcitabine
PDB codes: 1p62, 2no0.


  11. Ligand: LDC
4-amino-1-(2-deoxy-beta-l-erythro-pentofuranosyl)pyrimidin-2(1h)-one
PDB code: 2no7.